About: RMSD of the simulated systems calculated as a function of time Remdesivir in black, Saquaniv in red, Darunavir in green, Nat1 in blue and Syn 16 in purple

6LU7

Identification of chymotrypsin-like protease inhibitors of SARS-CoV-2 via integrated computational approach 1

Information

Details.

Scientist
Salman Ali Khan,Komal Zia,Sajda Ashraf,Reaz Uddin &Zaheer Ul-Haq
Protein
chymotrypsin like protease
Ligand
Remdesivir, Saquinavir and Darunavir and two natural compounds ( flavone and coumarine derivatives)
Simulation Duration
100ns
InChIKey
RWWYLEGWBNMMLJ-YSOARWBDSA-N
SMILES
CCC(CC)COC(=O)[C@H](C)N[P@](=O)(OC[C@@H]1[C@H]([C@H]([C@](O1)(C#N)C2=CC=C3N2N=CN=C3N)O)O)OC4=CC=CC=C4
Molecular Formula
C27H35N6O8P
Protein Details
3CLpro is also called the main protease (Mpro) and plays a major role in the viral replication. PLpro and 3CLpro cleaves the PP chain into 16 NSPs and out of the 16 NSPs generated, 11 NSPs are generated by the 3CLpro, making this protease one of the major targets for developing anti-SARS-CoV drugs
Ligand Details
Remdesivir is a nucleotide prodrug of an adenosine analog. It binds to the viral RNA-dependent RNA polymerase and inhibits viral replication , Saquinavir is an HIV-1 protease inhibitor used in combination with ritonavir and other antiretrovirals for the treatment of human immunodeficiency virus-1
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